Otonashi awakens only to learn he is dead. A rifle-toting girl named Yuri explains that they are in the afterlife, and Otonashi realizes the only thing he can remember about himself is his name. Yuri tells him that she leads the Shinda Sekai Sensen (Afterlife Battlefront) and wages war against a girl named Tenshi. Unable to believe Yuri's claims that Tenshi is evil, Otonashi attempts to speak with her, but the encounter doesn't go as he intended. Otonashi decides to join the SSS and battle Tenshi, but he finds himself oddly drawn to her. While trying to regain his memories and understand Tenshi, he gradually unravels the mysteries of the afterlife.

Operation Victory Arrow is set in the period between the end of Operation Mars in the second television series and the 2012 Strike Witches movie. The three 30-minute short stories depict the lives of the members who returned to their respective homes.

Japan, 1955: Mario Minakami has just arrived at Shounan Special Reform School along with five other teenagers who have been arrested on serious criminal charges. All assigned to the same cell, they meet older inmate Rokurouta Sakuragi—a former boxer—with whom they establish a close bond. Under his guidance, and with the promise that they will meet again on the outside after serving their sentences, the delinquents begin to view their hopeless situation in a better light.Rainbow: Nisha Rokubou no Shichinin follows the seven cellmates as they struggle together against the brutal suffering and humiliation inflicted upon them by Ishihara, a sadistic guard with a grudge on Rokurouta, and Gisuke Sasaki, a doctor who takes pleasure in violating boys. Facing such hellish conditions, the seven inmates must scrape together all the strength they have to survive until their sentences are up; but even if they do, just what kind of lives are waiting for them on the other side?

In an Edo-era Japan lush with a variety of sword-fighting styles, Shichika Yasuri practices the most unique one: Kyotouryuu, a technique in which the user's own body is wielded as a blade. The enigmatic seventh head of the Kyotouryuu school, Shichika lives quietly in exile with his sister Nanami until one day—the wildly ambitious strategist Togame barges into their lives. Togame brazenly requests that Shichika help in her mission to collect twelve unique swords, known as the "Deviant Blades," for the shogunate. Shichika accepts, interested in the girl herself rather than petty politics, and thus sets out on a journey. Standing in their way are the fierce wielders of these legendary weapons as well as other power-hungry entities who seek to thwart Togame's objective. In order to prevail against their enemies, the duo must become an unbreakable team as they forge ahead on a path of uncertainty and peril.