Senkuu has made it his goal to bring back two million years of human achievement and revive the entirety of those turned to statues. However, one man stands in his way: Tsukasa Shishiou, who believes that only the fittest of those petrified should be revived. As the snow melts and spring approaches, Senkuu and his allies in Ishigami Village finish the preparations for their attack on the Tsukasa Empire. With a reinvented cell phone model now at their disposal, the Kingdom of Science is ready to launch its newest scheme to recruit the sizable numbers of Tsukasa's army to their side. However, it is a race against time; for every day the Kingdom of Science spends perfecting their inventions, the empire rapidly grows in number. Reuniting with old friends and gaining new allies, Senkuu and the Kingdom of Science must stop Tsukasa's forces in order to fulfill their goal of restoring humanity and all its creations. With the two sides each in pursuit of their ideal world, the Stone Wars have now begun!

As a chief operative of the villainous Kisaragi Corporation, Sentouin Roku-gou receives orders to help the organization conquer the entire known universe. Tasked with infiltrating the kingdom of Grace—a mission that could change the fate of the world—Roku-gou mistakenly believes that his skills as a combatant are superb, fuelling his arrogant attitude. To ensure the success of the mission, Alice Kisaragi, an exceptional android with a youthful appearance named after the company itself, is assigned to be Roku-gou's travel companion. Upon their arrival at the outskirts of the kingdom, Alice and Roku-gou encounter Snow, the commander of the country's royal guard. Snow leads the pair to a broken legendary artifact, and Roku-gou seizes the opportunity for a long-awaited promotion at his company and changes the recitation for the sacred ritual to an embarrassing phrase. As punishment, the princess of the kingdom forces Roku-gou to become an honorary knight, fulfilling part of his mission. Having infiltrated the kingdom's inner circle, Roku-gou must now help his new employer fight against the Demon Lord's Army, all while perpetuating evil deeds as a combatant of the Kisaragi Corporation.

Shamans are extraordinary individuals with the ability to communicate with ghosts, spirits, and gods, which are invisible to ordinary people. The Shaman Fight—a prestigious tournament pitting shamans from all over the world against each other—is held every five hundred years, where the winner is crowned Shaman King. This title allows the current incumbent to call upon the Great Spirit and shape the world as they see fit. Finding himself late for class one night, Manta Oyamada, an ordinary middle school student, decides to take a shortcut through the local cemetery. Noticing him, a lone boy sitting on a gravestone invites Manta to stargaze with "them." Realizing that "them" refers to the boy and his ghostly friends, Manta flees the terror. Later, the boy introduces himself as You Asakura, a Shaman-in-training, and demonstrates his powers by teaming up with the ghost of six-hundred-year-old samurai Amidamaru to save Manta from a group of thugs. You befriends Manta due to his ability to see spirits, and with the help of Amidamaru, they set out to accomplish You's goal of becoming the next Shaman King.

"There's no way to beat this game. The only difference is when and where you die..." One month has passed since Akihiko Kayaba's deadly game began, and the body count continues to rise. Two thousand players are already dead. Kirito and Asuna are two very different people, but they both desire to fight alone. Nonetheless, they find themselves drawn together to face challenges from both within and without. Given that the entire virtual world they now live in has been created as a deathtrap, the surviving players of Sword Art Online are starting to get desperate, and desperation makes them dangerous to loners like Kirito and Asuna. As it becomes clear that solitude equals suicide, will the two be able to overcome their differences to find the strength to believe in each other, and in so doing survive? Sword Art Online: Progressive is a new version of the Sword Art Online tale that starts at the beginning of Kirito and Asuna's epic adventure—on the very first level of the deadly world of Aincrad!